@prefix skos: . @prefix schema: . @prefix dcterms: . @prefix foaf: . @prefix this: . @prefix sub: . @prefix np: . @prefix pav: . @prefix xsd: . @prefix rdfs: . @prefix prov: . @prefix npx: . sub:Head { this: np:hasAssertion sub:assertion; np:hasProvenance sub:provenance; np:hasPublicationInfo sub:pubinfo; a np:Nanopublication . } sub:assertion { a ; rdfs:seeAlso . a ; rdfs:seeAlso . a ; rdfs:seeAlso . a ; rdfs:seeAlso . a ; rdfs:seeAlso . "KmerFreq AR/Library1/Reverse FASTQ file"; ; a . "SOAPdenovo2/Library2/Reverse FASTQ file"; ; a . "GAGE/Reference genome file in FASTA format"; ; a . ; a ; rdfs:label "Workflow input file for SOAPdenovo2" . "Workflows/Galaxy-Workflow-Workflow_constructed_from_history__reproduce_s.aureus_pipeline_.ga"; a . ; a ; rdfs:comment "TODO:Upload and share the data"; rdfs:label "Workflow input file for SOAPdenovo2" . ; a ; rdfs:label "Workflow input file for GAGE/Reference genome file in FASTA format" . "KmerFreq AR/Library1/Forward FASTQ file"; ; a . "Outputs/gage.out.Tabular"; a ; rdfs:label "Workflow output file" . ; a ; rdfs:label "Workflow input file for KmerFreq AR" . ; a ; rdfs:label "Workflow input file for KmerFreq AR" . "SOAPdenovo2/Library2/Forward FASTQ file"; ; a . a ; skos:prefLabel "S. Aureus" . a ; skos:prefLabel "mechanics" . a ; skos:prefLabel "assembly" . a ; skos:prefLabel "genome assembly" . a ; skos:prefLabel "genetics" . a ; skos:prefLabel "Application" . pav:importedBy ; schema:author ; schema:contentSize 71593; schema:contentUrl "https://api.rohub.org/api/ros/2e023e94-f276-4281-8a0d-45568bb3755c/crate/download/"; schema:creator ; schema:dateCreated "2014-07-31 10:08:03.820000+00:00"; schema:dateModified "2025-10-18 11:54:52.614522+00:00"; schema:datePublished "2014-07-31 10:08:03.820000+00:00"; schema:description "Application of SOAP2denovo2 to the S. Aureus genome assembly"; schema:encodingFormat "application/ld+json"; schema:hasPart , , , , ; schema:identifier "https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c"; schema:license ; schema:name "SOAP2denovo2-Aureus"; , , , , , , , , , , , , , ; a , , schema:Dataset; "Raul Palma. \"SOAP2denovo2-Aureus.\" ROHub. Jul 31 ,2014. https://w3id.org/ro-id/2e023e94-f276-4281-8a0d-45568bb3755c." . schema:name "Statements"; a , schema:Dataset . schema:hasPart ; schema:name "Workflows"; a , schema:Dataset . schema:name "NanoStm"; a , schema:Dataset . schema:hasPart ; schema:name "Outputs"; a , schema:Dataset . schema:author ; schema:contentSize 66514; schema:contentUrl "https://api.rohub.org/api/resources/053d555c-c7e5-4f01-be3f-b98446dc23dc/download/"; schema:creator ; schema:dateCreated "2014-08-01 08:51:17.138000+00:00"; schema:dateModified "2022-03-25 16:46:54.443012+00:00"; schema:encodingFormat "image/png"; schema:license ; schema:name "sketch.png"; schema:sdDatePublished "2014-08-01 08:51:17.138000+00:00"; a , , schema:MediaObject . , , , ; , , , ; , , , ; ; ; schema:author ; schema:contentSize 15681; schema:contentUrl "https://api.rohub.org/api/resources/8d28fd47-26d3-4831-8287-b768a6bfafe6/download/"; schema:creator ; schema:dateCreated "2014-07-31 10:09:34.217000+00:00"; schema:dateModified "2022-03-25 16:46:55.708205+00:00"; schema:description "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper"; schema:license ; schema:name "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper"; schema:sdDatePublished "2014-07-31 10:09:34.217000+00:00"; a , schema:MediaObject, ; rdfs:comment "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper"; rdfs:label "Galaxy workflow for reproducing Table 2 of SOAPdenovo paper"; rdfs:seeAlso . schema:author ; schema:contentSize 31; schema:contentUrl "https://api.rohub.org/api/resources/b62060e1-d0d6-4d6a-8a06-617fc1892700/download/"; schema:creator ; schema:dateCreated "2014-07-31 10:10:24.821000+00:00"; schema:dateModified "2022-03-25 16:46:57.542753+00:00"; schema:license ; schema:name "Results calculating the N50 and corrected N50 scores"; schema:sdDatePublished "2014-07-31 10:10:24.821000+00:00"; a , , schema:MediaObject; rdfs:label "Results calculating the N50 and corrected N50 scores"; rdfs:seeAlso ; prov:wasDerivedFrom , , , ; prov:wasGeneratedBy . dcterms:conformsTo ; schema:about ; a schema:CreativeWork . schema:name "genome assembly"; a ; "99.6996996996997"; "99.6" . schema:name "astronautics (general)"; a ; "100.0"; "0.6523571610450745" . schema:name "astronautics"; a ; "100.0"; "0.6523571610450745" . schema:name "Application of SOAP2denovo2 to the S. Aureus genome assembly"; a ; "94.6946946946947"; "94.6" . schema:name "diligence"; a ; "33.58348968105065"; "17.9" . schema:name "earth sciences"; a ; "100.0"; "0.7194013595581055" . schema:name "application"; a ; "17.070484581497794"; "15.5" . schema:name "genome"; a ; "66.41651031894935"; "35.4" . schema:name "genome"; a ; "41.519823788546255"; "37.7" . schema:name "Genetics"; a ; "Science and technology/Natural science/Biology/Genetics" . schema:name "S. Aureus"; a ; "41.409691629955944"; "37.6" . schema:name "application of SOAP2denovo2"; a ; "0.3003003003003003"; "0.3" . schema:name "oceanography"; a ; "100.0"; "0.7194013595581055" . schema:name "SOAP2denovo2-Aureus."; a ; "5.305305305305306"; "5.3" . schema:name "Raul Palma"; a foaf:Agent . schema:name "service-account-enrichment"; a foaf:Agent . schema:name "service-account-generation-service"; a foaf:Agent . } sub:provenance { sub:assertion prov:wasDerivedFrom . } sub:pubinfo { this: dcterms:created "2025-11-11T16:44:53.047+01:00"^^xsd:dateTime; npx:introduces ; a npx:RoCrateNanopub; rdfs:label "SOAP2denovo2-Aureus" . sub:sig npx:hasAlgorithm "RSA"; npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEA4pPaESKwmC6l37P86K6TNLq6yeQtc7m9CvcqauLs/1FC0viHvQnFBgxj0a+loPDv/Egwe6OqFpa0iW9Ypnyz9YPoh+pxbRXonbuMOb+8Ry9hXZ+TEKfWjhjVDGEaClwfRwglh2HI/xfV4CD9AgvDOEoZQiyta8a90PYwJ3G6e70oCHTn61+OWTkI9KRYHOYgg3btdy2Z7q/30PTFawb2ZT5aIfIJYobUYv2a7yhtcqWCHZeKv0bxGnRjTFNx1rscBMlLJSzvRtpQc1cCRVEPFZHo1adaXCI9tGvn4cxeNQ96y8dxkN1XhpaJairde+23MDzf42Oe97KG2HYzKiyVnQIDAQAB"; npx:hasSignature "DhThnh4MAqxtk1gZkSfhm10gSycLAtzE2ZbPE7cnWvpcr4oCVFDg1b97gG5Rxh2Eb8UtaliHTtueT1QZzH1vHDqWPXPwbsv1kaMWWVCk4+W2MGP6j3qiEZTCpvHS8aGOPXGINP8nkYq5UMPAfitwVA4/3cgiekR0BgTCMP9oF6Dn9dmeLGWhN5IC9TwTtMoZJCZ550p8d9keMyvrG52vMOhWp04cObWVYK5dcrv0mfrD0bEH4lJVxzsmyVRtSXicNej7OzAcM7p/fLR59rsVtkuLwwaOxazpzV4pVVatBcrqBkoLj60nif33FZ6kD4JG1NSrFGA52/IDw0Chu+7xdw=="; npx:hasSignatureTarget this:; npx:signedBy . }